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Nov 5

An exactly solvable obstructed seam on a lattice Klein bottle: bulk-locked Majorana rings and register-dependent toric codes

We study a frustrated seam produced by literal reflection gluing of Wen's plaquette model on a closed lattice Klein bottle. The seam operators anticommute along two cycles for even circumference and one cycle of twice the length for odd circumference. Their algebra reduces to free Majorana rings, while the commuting bulk stabilizers constrain the allowed ring sectors. This bulk locking yields exact ground energies, excitation gaps and degeneracies, checked by phase-aware Pauli traces and finite-size diagonalization, including two 24-qubit energy predictions. The seam degeneracy is not topological: the single-site seam fields tested split it at second order. We contrast this obstructed gluing with consistent toric-code realizations. An edge register preserves the anyon labels; a Hadamard-dressed site register has colour-dependent seam transport, with ground-state degeneracy 2 or 4 for even circumference and a sign-frustrated exception at odd circumference. For the enumerated lattice isometries and sizes, we compute logical gates and distances, distinguishing abstract qubit relabelling from local hardware depth. Finally, on three 16- and 24-qubit lattices, chiral matter selects a holonomy doublet whose electric-field splitting follows two competing tunnelling routes. These matter results remain finite-size statements. The main result is the exact obstructed-seam solution with bulk sector locking; the register, gate and matter calculations delimit its relation to topological codes.

  • 2 authors
·
Oct 18

Counting higher-rank sheaves on toric threefolds

We develop an equivariant K-theoretic vertex formalism for a colored, abelianized higher-rank sector on smooth projective toric threefolds X. Nonzero first Chern classes are encoded as magnetic fluxes and absorbed into line-bundle twists, after which the virtual character is redistributed into finite perturbative, vertex, and edge contributions. We compute the resulting (unreduced and trace-free) virtual dimensions and analyze the interaction terms relevant to a possible reduction to rank one. We emphasize that, on a compact toric threefold, colored partitions do not classify all torus-fixed stable higher-rank sheaves: the resulting series is therefore a proposed abelianized/framed vertex series unless an additional comparison theorem with the full stable-sheaf moduli problem is supplied. When the threefold obstruction theory is not available in the desired form, we pass to the local Calabi--Yau fourfold Y=Tot(K_X) and formulate the corresponding colored DT4 vertex. A K_X-twisted tautological insertion removes fixed points with nontrivial fiber layers, reducing solid partitions to plane partitions at the level of the local vertex. In rank one we give a scheme-theoretic explanation: the Hilbert functor of subschemes of X is canonically isomorphic to the constrained Hilbert functor of subschemes of Y lying scheme-theoretically in the fixed zero section. Under the hypotheses of the DT4 K-theoretic Lefschetz/virtual-pullback formalism, the associated support insertion reduces the rank-one fourfold theory to the threefold theory. We keep this global rank-one statement logically distinct from the higher-rank colored-vertex reduction.

  • 3 authors
·
Oct 3

The kernel-block rank profiles of the Z_2Z_4-linear and the Z_{2^s}-linear Hadamard codes, and a complete classification of the Z_2Z_4Z_8-linear Hadamard codes

The kernel of a binary code containing the zero word partitions the binary coordinates into blocks, two coordinates lying in the same block when every kernel word takes the same value in both, and the kernel-block rank profile is the multiset of the dimensions of its linear span punctured on those blocks. For the family H^{t_1,t_2,t_3} of Z_2Z_4Z_8-linear Hadamard codes, this invariant is known explicitly and gives a complete classification of the family. In this paper, we compute it for the Z_2Z_4-linear and Z_{2^s}-linear Hadamard families with which those codes are compared, and we prove that it is constant for every nonlinear Z_2Z_4-linear Hadamard code and for every nonlinear Z_{2^s}-linear Hadamard code bar H^{a_1,dots,a_s} with sgeq2. The second statement is obtained without any rank formula, by exhibiting coordinate permutations that preserve the code and act transitively on its kernel blocks, which makes the argument uniform in s. We also prove a descent theorem: if bar H^{a_1,dots,a_s} is nonlinear and a_1geq2, then the code punctured on one kernel block is the Z_{2^{s-1}}-linear Hadamard code bar H^{a_1,dots,a_{s-1}}. Consequently, the constant local rank equals rank(bar H^{a_1,dots,a_{s-1}}) and is at least t-κ+2, where 2^t is the length and κ the kernel dimension. These results separate every nonlinear Z_2Z_4Z_8-linear Hadamard code from every Z_4-linear, Z_2Z_4-linear and Z_{2^s}-linear Hadamard code of the same length, except for the single infinite family H^{1,1,t-4} and bar H^{2,0,t-5} with tgeq5. The members of this infinite family agree in the rank, kernel dimension and the kernel-block rank profile, but a two-block refinement separates them.

  • 1 authors
·
Sep 9

Qudit Designs and Where to Find Them

Unitary t-designs are some of the most versatile tools in quantum information theory. Their applications range from randomized benchmarking and shadow tomography, to more fundamental ones such as emulating quantum chaos and establishing exponential separations between classical and quantum query complexity. While unitary designs originating from a group structure, such as the Clifford group, have proven to be incredibly useful for qubit systems, unfortunately, this is no longer true for qudits. In fact, the classification of finite-group representations rules out the existence of unitary 2-designs for arbitrary qudit dimensions. This severely limits the applicability of standard quantum information primitives when it comes to qudit systems. We overcome these limitations with a three-fold contribution. First, we introduce a general technique to construct families of weighted state t-designs in arbitrary qudit dimensions. These weighted state-designs generalize classical shadow tomography protocol from qubits to qudits. Second, we introduce a Clifford character RB that allows us to benchmark the qudit Clifford group in any dimension, including non-prime-power dimensions. And third, we establish bounds on the quantum circuit complexity of generating approximate unitary-designs from native gates in existing quantum hardware such as high-spin and cavity-QED qudits. Our work further highlights the analogy between spin and optical coherent states by proving that spin-GKP codewords form a state 2-design while spin coherent states do not; in direct analogy with the optical case. This work is structured as a pedagogical and self-contained introduction to unitary designs and their applications to qudit systems.

  • 5 authors
·
Mar 3

Fast and accurate AI-based pre-decoders for color codes

Color codes are promising alternatives to surface codes for universal fault-tolerant quantum computing due to their simpler lattice-surgery protocols and the transversal implementation of logical Clifford gates. However, their practical deployment has been limited by slower decoding algorithms and worse logical failure rates and thresholds compared to surface codes. Although AI-based logical-flip decoders have recently been proposed to address these challenges, no clear framework currently exists for implementing such decoders within the parallel block-wise decoding schemes in both space and time required for large-scale fault-tolerant computation. AI-based pre-decoders offer a scalable alternative due to their local nature. By performing spacelike corrections on physical qubits and timelike corrections on stabilizer measurements, pre-decoders are naturally compatible with parallel block-wise decoding schemes and lattice-surgery protocols. In this work, we introduce AI-based pre-decoders for triangular color codes. We present a novel neural-network architecture for their implementation and develop methods to simplify the complex training data generated by color-code syndrome-extraction circuits containing feedforward operations. Remarkably, we find that both logical failure rates (LERs) and runtimes improve relative to raw Chromobius decoding as the code distance increases. For example, at code distance d=31 and physical error rate p=0.3%, our pre-decoder + Chromobius pipeline improves the logical failure rate by a factor of 347x while reducing runtime by 7.33x compared to raw Chromobius decoding alone. These results demonstrate that AI-based pre-decoding can substantially narrow the performance gap between color codes and surface codes, bringing color codes closer to practical large-scale fault-tolerant quantum computation.

  • 4 authors
·
Jul 10

High-throughput calculations of magnetic topological materials

The discoveries of intrinsically magnetic topological materials, including semimetals with a large anomalous Hall effect and axion insulators, have directed fundamental research in solid-state materials. Topological quantum chemistry has enabled the understanding of and the search for paramagnetic topological materials. Using magnetic topological indices obtained from magnetic topological quantum chemistry (MTQC), here we perform a high-throughput search for magnetic topological materials based on first-principles calculations. We use as our starting point the Magnetic Materials Database on the Bilbao Crystallographic Server, which contains more than 549 magnetic compounds with magnetic structures deduced from neutron-scattering experiments, and identify 130 enforced semimetals (for which the band crossings are implied by symmetry eigenvalues), and topological insulators. For each compound, we perform complete electronic structure calculations, which include complete topological phase diagrams using different values of the Hubbard potential. Using a custom code to find the magnetic co-representations of all bands in all magnetic space groups, we generate data to be fed into the algorithm of MTQC to determine the topology of each magnetic material. Several of these materials display previously unknown topological phases, including symmetry-indicated magnetic semimetals, three-dimensional anomalous Hall insulators and higher-order magnetic semimetals. We analyse topological trends in the materials under varying interactions: 60 per cent of the 130 topological materials have topologies sensitive to interactions, and the others have stable topologies under varying interactions. We provide a materials database for future experimental studies and open-source code for diagnosing topologies of magnetic materials.

  • 9 authors
·
Feb 28, 2020

Large Language Model-Guided Discovery of Weight-Five Bivariate Bicycle Codes

Building on our earlier program-evolution workflow guided by large language models (LLMs), we study weight-five bivariate bicycle (BB) and perturbed bivariate bicycle (PBB) codes. The resulting catalogue contains 1,142 distinct code proposals, including 1,081 nonbaseline proposals attributable to LLM-generated programs. Across the catalogue, we certify connected Calderbank--Shor--Steane (CSS) realizations [[96,4,10]], [[140,6,10]], and [[180,4,14]]. A post-search comparison certifies seven imported Lin--Pryadko archive constructions. For leading parameter triples also represented in that archive, we provide exact distance evidence, explicit bivariate presentations, and verified component reductions. A basis-independent connectivity analysis identifies 409 of the 1,142 catalogue entries as disconnected and shows that 73.1\% of the classes with exact distance certificates contain repeated connected components. Algebraic analysis organizes the connected CSS classes into order-3, order-7, and order-15 cyclotomic-kernel strata. The strongest exact connected PBB parameter point is [[216,4,10]], attained by two distinct component classes. Among the 936 distinct CSS proposals from the LLM-guided campaign with a recorded positive distance, 816 (87.18\%) are certified at dgeq5. For comparison, three random-search controls each sample 6,444 CSS code proposals uniformly without replacement, using the same per-lattice and encoded-dimension sample counts as the LLM-guided campaign. In these controls, 4,672--4,785 proposals (72.50--74.26\%) meet the same criterion. The LLM-guided campaign has the higher certified yield, while the random controls cover more connected classes. Together, these results extend LLM-guided discovery to a more constrained code family and provide a reproducible structural and exact-distance account of its strongest candidates.

  • 1 authors
·
Oct 4

Qiskit Code Assistant: Training LLMs for generating Quantum Computing Code

Code Large Language Models (Code LLMs) have emerged as powerful tools, revolutionizing the software development landscape by automating the coding process and reducing time and effort required to build applications. This paper focuses on training Code LLMs to specialize in the field of quantum computing. We begin by discussing the unique needs of quantum computing programming, which differ significantly from classical programming approaches or languages. A Code LLM specializing in quantum computing requires a foundational understanding of quantum computing and quantum information theory. However, the scarcity of available quantum code examples and the rapidly evolving field, which necessitates continuous dataset updates, present significant challenges. Moreover, we discuss our work on training Code LLMs to produce high-quality quantum code using the Qiskit library. This work includes an examination of the various aspects of the LLMs used for training and the specific training conditions, as well as the results obtained with our current models. To evaluate our models, we have developed a custom benchmark, similar to HumanEval, which includes a set of tests specifically designed for the field of quantum computing programming using Qiskit. Our findings indicate that our model outperforms existing state-of-the-art models in quantum computing tasks. We also provide examples of code suggestions, comparing our model to other relevant code LLMs. Finally, we introduce a discussion on the potential benefits of Code LLMs for quantum computing computational scientists, researchers, and practitioners. We also explore various features and future work that could be relevant in this context.

  • 8 authors
·
May 29, 2024

Direction-Preserving Number Representations

Low-precision number formats are widely used in modern machine learning systems due to their efficiency. Accurate direction representation is key to the accuracy of vector operations. This work precisely explores the extent to which the direction of a vector can be represented by selecting its scalar elements from a common finite alphabet of a given size. This is standard practice in machine learning, where low-precision significands may be narrow-width floating-point or integer values. A geometric framework is introduced for analyzing the directional coverage of such product-structured codes. This work analytically quantifies the suboptimality gap between such product-structured codes and spherical codes for the vector as a whole, in both low and asymptotically high dimensions. Furthermore, within the product code class, it is proven that the standard formats of two's complement, fixed-point, and floating-point are suboptimal, again with quantified gap, pointing to the potential to develop new scalar number formats. Such scalar alphabets are numerically optimized across multiple block dimensions for directional coverage, including the dimension used in NVIDIA's NVFP4 format. Experimental results are presented comparing the performance of standard formats and the optimized alphabet. We find that for four bits, NVIDIA's choice of E2M1 closely approximates the optimized alphabet, providing a geometric explanation for its strong performance in low-precision machine learning workloads and an analytical understanding of the link between that superiority and block size. We provide open-source formal proofs in Lean for the theorems in this work, along with the experimental code and the optimized alphabets obtained.

  • 2 authors
·
May 7

Breaking the 1.58-bit Barrier for Ternary LLMs

Ternary Large Language Models (LLM) store every weight as one of three symbols {-1,0,+1}, so the cost of a ternary model is conventionally referenced to the information-theoretic log_2 3 approx 1.585 bits per weight. The prevailing deployment format packs five ternary weights into one byte (five-trit packing), and due to the power-of-two group sizes used in practice this rounds up to 1.625 bits per weight. This effective storage bit-width treats the three symbols {-1,0,+1} as equiprobable. We measure the actual symbol distribution of 29 ternary LLM models and find that zeros account for up to 51.5% of all weights. Motivated by this finding, we introduce BITCOS, a simple distribution-adaptive layout comprised of a dense presence bitmap plus a compacted sign vector, and costs 2 - z bits per weight element given a zero density z in the model's weights. BITCOS stores weights more compactly than the five-trit packing in 26 of the 29 tested models, and reaches 1.485 bits per weight on the sparsest of them. BITCOS is amenable to efficient unpacking on modern processors and GPUs, and we present optimized unpacking sequences for AVX-512, AVX2 and Intel Xe2 GPUs. Measured against production state-of-the-art ternary matrix-vector multiplication kernels, at the zero densities real-world ternary models exhibit, the realized gain with our proposed layout is up to 1.28times. Finally, we illustrate end-to-end LLM inference results on 5 different platforms (client and server CPUs, integrated and discrete Xe2 GPUs) where decode throughput improves by up to 1.18times on CPUs and 1.27times on GPUs.

  • 3 authors
·
Sep 13

Tied Trit-Planes: Constraining PTQTP to a Uniform Nine-Level Quantizer, with a Persistent Folded Format for Disk-Streamed Mixture-of-Experts Serving

PTQTP decomposes LLM weight matrices into two ternary (trit) planes with two free per-group scales. Tying the scales to a fixed ratio of three collapses the decomposition into a single uniform nine-level quantizer, a known balanced-ternary identity. To our knowledge, at the time of writing, this work is the first to impose that identity as a constraint inside PTQTP's solver. The two trit planes then fold losslessly into one 4-bit code plane that we make the persistent serving representation: disk bytes, expert-cache bytes, and kernel input are the same 4.0625-bits/weight blocks, consumed in one integer dot pass. For this conjunction (ratio-3 nine-level code, CPU-SIMD kernels, SSD expert streaming, identical persistent bytes) we likewise found no precedent. We apply this to the routed experts of DeepSeek-V4-Flash-0731, a 284B-A13B mixture-of-experts model, quantizing in one shot from the released MXFP4 expert weights and streaming experts from SSD on a 64 GB laptop. Against a 4.5-bit Q4_K baseline, measured one process per fixture with an expert-lossless anchor arm as reference control, the tied model matches the official serving API on 5/5 fixtures at step 0 (Q4_K: 4/5) and 12/14 captured continuation steps (11/14), scores 86 vs. 84 on a 100-item MMLU subset, decodes 6.7% faster in decode phase, and ships 9% smaller files: no detected fidelity difference at these small evaluation sizes, and every fixture-level difference between the arms traces to a single measured near-tie cell. The tied fit nevertheless shows higher weight-reconstruction error and worse perplexity, a measured dissociation between proxy metrics and reference fidelity. A cumulative trunk-ternarization ladder and bitwise-pinned aarch64/x86-64 kernels complete the report. All code, formats, and evaluation artifacts are open source in the fucina inference stack.

  • 1 authors
·
Aug 8

Aperiodic Structures Never Collapse: Fibonacci Hierarchies for Lossless Compression

We study whether an aperiodic hierarchy can provide a structural advantage for lossless compression over periodic alternatives. We show that Fibonacci quasicrystal tilings avoid the finite-depth collapse that affects periodic hierarchies: usable n-gram lookup positions remain non-zero at every level, while periodic tilings collapse after O(log p) levels for period p. This yields an aperiodic hierarchy advantage: dictionary reuse remains available across all scales instead of vanishing beyond a finite depth. Our analysis gives four main consequences. First, the Golden Compensation property shows that the exponential decay in the number of positions is exactly balanced by the exponential growth in phrase length, so potential coverage remains scale-invariant with asymptotic value Wvarphi/5. Second, using the Sturmian complexity law p(n)=n+1, we show that Fibonacci/Sturmian hierarchies maximize codebook coverage efficiency among binary aperiodic tilings. Third, under long-range dependence, the resulting hierarchy achieves lower coding entropy than comparable periodic hierarchies. Fourth, redundancy decays super-exponentially with depth, whereas periodic systems remain locked at the depth where collapse occurs. We validate these results with Quasicryth, a lossless text compressor built on a ten-level Fibonacci hierarchy with phrase lengths {2,3,5,8,13,21,34,55,89,144}. In controlled A/B experiments with identical codebooks, the aperiodic advantage over a Period-5 baseline grows from 36{,}243 B at 3 MB to 11{,}089{,}469 B at 1 GB, explained by the activation of deeper hierarchy levels. On enwik9, Quasicryth achieves 225{,}918{,}349 B (22.59%), with 20{,}735{,}733 B saved by the Fibonacci tiling relative to no tiling.

  • 1 authors
·
Mar 16 2

How Many Code and Test Cases Are Enough? Evaluating Test Cases Generation from a Binary-Matrix Perspective

Evaluating test cases automatically generated by Large Language Models (LLMs) is a critical yet challenging task. Existing benchmarks often evaluate the exclusion ratio on large, unstructured collections of wrong codes, suffering from high computational costs and score inflation. Furthermore, they inadvertently reward generators that detect common, trivial bugs, while failing to penalize their inability to identify rare yet critical faults. In this work, we connect two fundamental questions: (1) What is the minimal set of wrong codes sufficient to represent the entire error space? and (2) What is the minimal set of test cases needed to distinguish them? We introduce a novel framework that formalizes benchmark construction as finding an optimal diagnostic basis in a binary code-test matrix, where rows represent wrong codes and columns represent test case results. The rank of this matrix specifies the minimal number of independent error patterns (wrong codes) and provides a tight upper bound on the number of test cases required for complete fault coverage. Our objective is to identify a basis of size equal to the matrix rank that maximizes internal diversity. To tackle this NP-hard problem, we propose WrongSelect, an efficient approximation algorithm to select maximally diverse wrong codes. Applying this framework to millions of competitive programming submissions, we construct TC-Bench, a compact, diverse, and inflation-resistant benchmark. Extensive experiments show that even the most advanced test case generation methods achieve only ~60% exclusion rates on TC-Bench, exposing a significant gap in their diagnostic power and highlighting substantial room for future improvement. Our dataset is available at: https://huggingface.co/datasets/Luoberta/TC-Bench and our code is at: https://github.com/Luowaterbi/TC-Bench.

  • 8 authors
·
Oct 9, 2025

Qin's Algorithm, Continued Fractions and 2-dimensional Lattices

In his celebrated book "Mathematical Treatise in Nine Sections" of 1247, Qin, Jiushao described the Chinese remainder theorem with great detail and generality. He also gave a method for computing modular inverse under the name of "DaYan deriving one". Historical significance of DaYan deriving one method has been well studied. In this paper, we investigate its modern mathematical nature from the perspectives of number theory and algorithm. One of the remarkable features of Qin's algorithm is that it keeps a state of four variables in a matrix form. Its choice of variables and layout provide natural ways of connecting several important mathematical concepts. An invariant about the state is also observed which provides a convenient yet powerful tool in proving several important mathematical results. The paper first explains Qin's algorithm and proves some of its properties. Then the connection with continued fractions is examined, the results show that the states of Qin's algorithm contain rich information about continued fractions and some classical arguments can be derived easily. The last part of the paper discusses a family of 2-dimensional lattices of number theoretic significance by proving that the shortest vectors of these lattices can be obtained from the states of Qin's algorithm. This result is surprising in that a shortest lattice vector is found in a well-regulated set. A method of computing such shortest vectors is proposed.ed.

  • 2 authors
·
Nov 6, 2023

Faces of highest weight modules and the universal Weyl polyhedron

Let V be a highest weight module over a Kac-Moody algebra g, and let conv V denote the convex hull of its weights. We determine the combinatorial isomorphism type of conv V, i.e. we completely classify the faces and their inclusions. In the special case where g is semisimple, this brings closure to a question studied by Cellini-Marietti [IMRN 2015] for the adjoint representation, and by Khare [J. Algebra 2016; Trans. Amer. Math. Soc. 2017] for most modules. The determination of faces of finite-dimensional modules up to the Weyl group action and some of their inclusions also appears in previous work of Satake [Ann. of Math. 1960], Borel-Tits [IHES Publ. Math. 1965], Vinberg [Izv. Akad. Nauk 1990], and Casselman [Austral. Math. Soc. 1997]. For any subset of the simple roots, we introduce a remarkable convex cone which we call the universal Weyl polyhedron, which controls the convex hulls of all modules parabolically induced from the corresponding Levi factor. Namely, the combinatorial isomorphism type of the cone stores the classification of faces for all such highest weight modules, as well as how faces degenerate as the highest weight gets increasingly singular. To our knowledge, this cone is new in finite and infinite type. We further answer a question of Michel Brion, by showing that the localization of conv V along a face is always the convex hull of the weights of a parabolically induced module. Finally, as we determine the inclusion relations between faces representation-theoretically from the set of weights, without recourse to convexity, we answer a similar question for highest weight modules over symmetrizable quantum groups.

  • 2 authors
·
Oct 31, 2016

TransICD: Transformer Based Code-wise Attention Model for Explainable ICD Coding

International Classification of Disease (ICD) coding procedure which refers to tagging medical notes with diagnosis codes has been shown to be effective and crucial to the billing system in medical sector. Currently, ICD codes are assigned to a clinical note manually which is likely to cause many errors. Moreover, training skilled coders also requires time and human resources. Therefore, automating the ICD code determination process is an important task. With the advancement of artificial intelligence theory and computational hardware, machine learning approach has emerged as a suitable solution to automate this process. In this project, we apply a transformer-based architecture to capture the interdependence among the tokens of a document and then use a code-wise attention mechanism to learn code-specific representations of the entire document. Finally, they are fed to separate dense layers for corresponding code prediction. Furthermore, to handle the imbalance in the code frequency of clinical datasets, we employ a label distribution aware margin (LDAM) loss function. The experimental results on the MIMIC-III dataset show that our proposed model outperforms other baselines by a significant margin. In particular, our best setting achieves a micro-AUC score of 0.923 compared to 0.868 of bidirectional recurrent neural networks. We also show that by using the code-wise attention mechanism, the model can provide more insights about its prediction, and thus it can support clinicians to make reliable decisions. Our code is available online (https://github.com/biplob1ly/TransICD)

  • 3 authors
·
Mar 28, 2021

CayleyPy Growth: Efficient growth computations and hundreds of new conjectures on Cayley graphs (Brief version)

This is the third paper of the CayleyPy project applying artificial intelligence to problems in group theory. We announce the first public release of CayleyPy, an open source Python library for computations with Cayley and Schreier graphs. Compared with systems such as GAP and Sage, CayleyPy handles much larger graphs and performs several orders of magnitude faster. Using CayleyPy we obtained about 200 new conjectures on Cayley and Schreier graphs, focused on diameters and growth. For many Cayley graphs of symmetric groups Sn we observe quasi polynomial diameter formulas: a small set of quadratic or linear polynomials indexed by n mod s. We conjecture that this is a general phenomenon, giving efficient diameter computation despite the problem being NP hard. We propose a refinement of the Babai type conjecture on diameters of Sn: n^2/2 + 4n upper bounds in the undirected case, compared to previous O(n^2) bounds. We also provide explicit generator families, related to involutions in a square with whiskers pattern, conjectured to maximize the diameter; search confirms this for all n up to 15. We further conjecture an answer to a question posed by V M Glushkov in 1968 on directed Cayley graphs generated by a cyclic shift and a transposition. For nilpotent groups we conjecture an improvement of J S Ellenberg's results on upper unitriangular matrices over Z/pZ, showing linear dependence of diameter on p. Moreover. Some conjectures are LLM friendly, naturally stated as sorting problems verifiable by algorithms or Python code. To benchmark path finding we created more than 10 Kaggle datasets. CayleyPy works with arbitrary permutation or matrix groups and includes over 100 predefined generators. Our growth computation code outperforms GAP and Sage up to 1000 times in speed and size.

  • 49 authors
·
Sep 23, 2025

A medical coding language model trained on clinical narratives from a population-wide cohort of 1.8 million patients

Medical coding translates clinical documentation into standardized codes for billing, research, and public health, but manual coding is time-consuming and error-prone. Existing automation efforts rely on small datasets that poorly represent real-world patient heterogeneity. We trained a language model on 5.8 million electronic health records from 1.8 million patients across nearly all specialties in Eastern Denmark (2006--2016) to predict ICD-10 codes from clinical notes, medications, and laboratory results. Evaluated on 270,000 held-out patients, the model achieved a micro F1 of 71.8% and a top-10 recall of 95.5%. Performance varied by specialty (F1: 53--91%), with higher scores in specialties with well-defined diagnostic criteria. Codes appearing predominantly as secondary diagnoses had markedly lower F1 scores. For three such codes (suicide-related behaviors, weight disorders, and hypertension), the model identified thousands of uncoded cases, of which 76-86% were confirmed valid upon manual review, suggesting systematic under-coding rather than model error. These findings suggest under-coding of secondary diagnoses in Eastern Denmark during this period, with potential implications for epidemiological research, public health surveillance, and understanding of multimorbidity. Similar time constraints and reimbursement structures in other healthcare systems suggest this may not be isolated to this dataset. The model can automate coding for approximately 50% of cases and provide accurate suggestions for most others, and may offer a practical solution to help capture missed secondary conditions.

  • 6 authors
·
Mar 2

Optimizing NOTEARS Objectives via Topological Swaps

Recently, an intriguing class of non-convex optimization problems has emerged in the context of learning directed acyclic graphs (DAGs). These problems involve minimizing a given loss or score function, subject to a non-convex continuous constraint that penalizes the presence of cycles in a graph. In this work, we delve into the optimization challenges associated with this class of non-convex programs. To address these challenges, we propose a bi-level algorithm that leverages the non-convex constraint in a novel way. The outer level of the algorithm optimizes over topological orders by iteratively swapping pairs of nodes within the topological order of a DAG. A key innovation of our approach is the development of an effective method for generating a set of candidate swapping pairs for each iteration. At the inner level, given a topological order, we utilize off-the-shelf solvers that can handle linear constraints. The key advantage of our proposed algorithm is that it is guaranteed to find a local minimum or a KKT point under weaker conditions compared to previous work and finds solutions with lower scores. Extensive experiments demonstrate that our method outperforms state-of-the-art approaches in terms of achieving a better score. Additionally, our method can also be used as a post-processing algorithm to significantly improve the score of other algorithms. Code implementing the proposed method is available at https://github.com/duntrain/topo.

  • 4 authors
·
May 26, 2023